Prescan ImagesΒΆ

Mag echo3

n=20

raw_images_layers = []
for path in raw_images_path:
    raw_images_layers.append(load_image(path))

# for layers in raw_images_layers:
#     tmp1=[]
#     tmp2=[]
#     for array in layers:
#         for a in array:
#             tmp1.append(max(a))
#             tmp2.append(min(a))
#     print(max(tmp1))
#     print(min(tmp2))

mapp_raw_images_layers = []
for layers in raw_images_layers[1:4]:
    mapp_layers=[]
    for i in range(n+1):
        mapp_layers.append(mapp(layers[i],[0,31],[0,255]))
    mapp_raw_images_layers.append(mapp_layers)

mapp_layers=[]
for i in range(n+1):
     mapp_layers.append(mapp(raw_images_layers[0][i],[0,520],[0,255]))
mapp_raw_images_layers.append(mapp_layers)

visualise_slices(mapp_raw_images_layers[0], n, raw_images_titles[0],"fig31.html")
display(HTML('fig31.html'))